Metadata-Version: 1.1
Name: thalamus
Version: 0.9.14
Summary: The GNU Health Federation Message and Authentication Server
Home-page: http://health.gnu.org
Author: GNU Solidario
Author-email: health@gnusolidario.org
License: UNKNOWN
Download-URL: http://ftp.gnu.org/gnu/health
Description: Thalamus: The GNU Health Federation Message and Authentication Server
        =====================================================================
        
        The Thalamus project provides a RESTful API hub to all the GNU Health 
        Federation nodes. The main functions are:
        
        #. **Message server**: A concentrator and message relay from and to  
           the participating nodes in the GNU Health Federation and the GNU Health
           Information System (PgSQL). Some of the participating nodes include 
           the GNU Health HMIS, MyGNUHealth mobile PHR application,
           laboratories, research institutions and civil offices.
        
        #. **Authentication Server**: Thalamus also serves as an authentication and
           authorization server to interact with the GNUHealth Information System
        
        
        Thalamus is part of the GNU Health project, but it is a self contained, 
        independent server that can be used in different health related scenarios.
        
        Installation
        ------------
        Thalamus is pip-installable::
        
          $ pip3 install --upgrade --user thalamus
         
        Technology
        ----------
        RESTful API: Thalamus uses a REST (Representional State Transfer) 
        architectural style, powered by 
        `Flask <https://en.wikipedia.org/wiki/Flask_(web_framework)>`_ technology
        
        Thalamus will perform CRUD (Create, Read, Update, Delete) operations. They
        will be achived via the following methods upon resources and their instances.
        
        * **GET** : Read
         
        * **POST** : Create
         
        * **PATCH** : Update
         
        * **DELETE** : Delete.
        
        The DELETE operations will be minimal.
          
        
        JSON: The information will be encoded in `JSON <https://en.wikipedia.org/wiki/JSON>`_ format.
        
        Resources
        ---------
        
        Some resources and end-points are:
        
        * People (/people)
        
        * Pages of Life (/pols)
        
        * DomiciliaryUnits (/domiciliary-units)
        
        * PersonalDocs (/personal_docs)
        
        
        Running Thalamus from a WSGI Container
        --------------------------------------
        In production settings, for performance reasons you should use a HTTP server.
        We have chosen `uWSGI <http://projects.unbit.it/uwsgi>`_ , but you can use any WSGI server. We have
        also included the configuration file for Gunicorn if you prefer it instead of uWSGI.
        
        For example, you can run the Thalamus application from uWSGI as follows.
        The default configuration file uses secure (SSL) connections::
        
          $ uwsgi --ini etc/thalamus_uwsgi.ini
        
        
        For development, ff you want to run it directly from the Flask Werkzeug server,::
        
          $ python3 ./thalamus.py
        
        
        Examples
        --------
        **Command-line, using httpie**
        
        Retrieve the demographic information of person::
        
          $ http --verify no --auth ARGBUE111FAV:freedom https://federation.gnuhealth.org:8443/people/ESPGNU777ORG
        
        
        Yields to::
        
            HTTP/1.1 200 OK
            Access-Control-Allow-Origin: *
            Connection: close
            Content-Length: 547
            Content-Type: application/json
            Date: Thu, 30 Jul 2020 12:01:37 GMT
            Server: gunicorn/20.0.0
        
            {
                "_id": "ESPGNU777ORG",
                "active": true,
                "dob": "1990-10-04",
                "education": "tertiary",
                "ethnicity": "latino",
                "gender": "f",
                "id": "ESPGNU777ORG",
                "lastname": "Betz",
                "marital_status": "married",
                "modification_info": {
                    "node": "SPAIN-LASPALMAS-GNUSOLIDARIO-GRAL_HOSPITAL",
                    "timestamp": "2018-11-06 19:24:43.662846",
                    "user": "ITAPYT999HON"
                },
                "name": "Ana",
                "password": "$2b$12$cjrKVGYEKUwCmVDCtEnwcegcrmECTmeBz526AAD/ZqMGPWFpHJ4FW",
                "profession": "teacher",
                "roles": [
                    "end_user"
                ]
            }
        
        **Retrieve the demographics information globally**::
        
          $ http --verify no --auth ARGBUE111FAV:freedom https://federation.gnuhealth.org:8443/people
        
        Yields to::
        
            HTTP/1.1 200 OK 
            Access-Control-Allow-Origin: * 
            Connection: close 
            Content-Length: 2715 
            Content-Type: application/json 
            Date: Mon, 20 Jul 2020 18:03:24 GMT 
            Server: gunicorn/20.0.0 
        
            [ 
            [ 
                { 
                    "active": true, 
                    "dob": "1984-10-05", 
                    "education": "tertiary", 
                    "ethnicity": "latino", 
                    "gender": "f", 
                    "id": "ITAPYT999HON", 
                    "lastname": "Cordara", 
                    "marital_status": "married", 
                    "name": "Cameron", 
                    "password": "$2b$12$Y9rX7PoTHRXhTO1H78Tan.8mVmyayGAUIveiYxu2Qeo0ZDRvJQ8/2", 
                    "profession": "teacher", 
                    "roles": [ 
                        "end_user", 
                        "health_professional" 
                    ] 
                } 
            ],
            [ 
                { 
                    "creation_info": { 
                        "node": "SPAIN-LASPALMAS-GNUSOLIDARIO-GRAL_HOSPITAL", 
                        "timestamp": "2019-11-20 10:39:21.162731", 
                        "user": "ITAPYT999HON" 
                    }, 
                    "dob": "1999-10-12", 
                    "gender": "m", 
                    "id": "DEUMOP095IDI", 
                    "lastname": "Dillinger", 
                    "name": "John Doe", 
                    "roles": [ 
                        "end_user" 
                    ] 
                } 
            ],
        
            
            [ 
                { 
                    "active": true, 
                    "dob": "2008-10-12", 
                    "education": "tertiary", 
                    "ethnicity": "latino", 
                    "gender": "f", 
                    "id": "ARGBUE111FAV", 
                    "lastname": "Root", 
                    "marital_status": "married", 
                    "name": "Admin", 
                    "password": "$2b$12$McKDNgArdHKbUssD1fj64ecpdbJGMIt29ns7DGvqzqIT26W0dtJzi", 
                    "profession": "System Administrator", 
                    "roles": [ 
                        "root" 
                    ] 
                } 
            ], 
            [ 
                { 
                    "_id": "ESPGNU777ORG", 
                    "active": true, 
                    "dob": "1990-10-04", 
                    "education": "tertiary", 
                    "ethnicity": "latino", 
                    "gender": "f", 
                    "id": "ESPGNU777ORG", 
                    "lastname": "Betz", 
                    "marital_status": "married", 
                    "modification_info": { 
                        "node": "SPAIN-LASPALMAS-GNUSOLIDARIO-GRAL_HOSPITAL", 
                        "timestamp": "2018-11-06 19:24:43.662846", 
                        "user": "ITAPYT999HON" 
                    }, 
                    "name": "Ana", 
                    "password": "$2b$12$cjrKVGYEKUwCmVDCtEnwcegcrmECTmeBz526AAD/ZqMGPWFpHJ4FW", 
                    "profession": "teacher", 
                    "roles": [ 
                        "end_user" 
                    ] 
                } 
            ], 
            ]
        
        
        **Using Python requests**::
        
          >>> import requests
          >>> person = requests.get('https://localhost:8443/people/ESPGNU777ORG', auth=('ITAPYT999HON', 'gnusolidario'), verify=False)
          >>> person.json()
            {'_id': 'ESPGNU777ORG', 'active': True, 'biological_sex': 'female','dob': 'Fri, 04 Oct 1985 13:05:00 GMT',
            'education': 'tertiary', 'ethnicity': 'latino', 'gender': 'female', 'lastname': 'Betz', 'marital_status': 'married',
            'name': 'Ana', 'password': '$2b$12$cjrKVGYEKUwCmVDCtEnwcegcrmECTmeBz526AAD/ZqMGPWFpHJ4FW', 'profession': 'teacher',
            'roles': ['end_user']}
        
        **Note on roles**
        The demo user "ITAPYT999HON" is a health professional (health_professional role),
        so she has global access to demographic information. 
        
        The user "ARGBUE111FAV", password "freedom". This is the "root" user for the demo database. 
        
        Check the ``roles.cfg`` file for examples information about roles and ACLs.
        
        
        Development
        -----------
        Thalamus is part of the GNU Health project.
        
        The development will be done on GNU Savannah, using the Mercurial repository.
        
        Tasks, bugs and mailing lists will be on health-dev@gnu.org , for development.
        
        General questions can be done on health@gnu.org mailing list.
        
        Homepage
        --------
        https://www.gnuhealth.org
        
        
        Release Cycle
        -------------
        Thalamus, as other GNU Health components, will follow its own release process.
        
        
        Documentation
        -------------
        The Thalamus documentation will be at the corresponding
        chapter in the GNU Health Wikibook
        
        https://en.wikibooks.org/wiki/GNU_Health
        
        :Author: Luis Falcon <falcon@gnuhealth.org>
        
Keywords: health API REST
Platform: any
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Web Environment
Classifier: Framework :: Flask
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
